Issues

• assistant-ui: make the new UI the default and remove the old UI and the feature flag

  galaxyproject/brc-analytics#1962 · Filter by author frano-m opened on Nov 4, 2026
  

• Update findable-ui to v60 and apply non-breaking npm audit fixes

  galaxyproject/brc-analytics#1961 · Filter by author frano-m opened on Nov 4, 2026
  

• GenArk ncbiGene GTFs split multi-exon genes into one-exon transcripts in 534 of 2,031 catalog assemblies

  galaxyproject/brc-analytics#1960 · Filter by author NoopDog opened on Nov 4, 2026
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• GenArk augustus GTFs have no exon rows for 2,459 of 3,081 catalog assemblies, so RNA-seq fails at STAR

  galaxyproject/brc-analytics#1959 · Filter by author NoopDog opened on Nov 4, 2026
  

• assistant: resolve the extractor's workflow by a structured id and share one catalog workflow lookup

  galaxyproject/brc-analytics#1957 · Filter by author frano-m opened on Nov 4, 2026
  

• Gene snapshot: move the loader lifecycle out of GeneCatalogService

  galaxyproject/brc-analytics#1956 · Filter by author NoopDog opened on Nov 3, 2026

• Assistant: clear an assembly that can't be resolved to an accession, as the workflow already is

  galaxyproject/brc-analytics#1955 · Filter by author NoopDog opened on Nov 3, 2026
  

• [Epic] Assistant: backend follow-ups after the new UI goes live

  galaxyproject/brc-analytics#1951 · Filter by author frano-m opened on Nov 3, 2026
  

• Gene pages: decide with BioNym which genes get graphs, who runs them, and how a new run replaces an old one

  galaxyproject/brc-analytics#1948 · Filter by author NoopDog opened on Nov 3, 2026
  1

  

• Gene pages: publish BioNym graphs to the gene data store and serve them through a pin

  galaxyproject/brc-analytics#1947 · Filter by author NoopDog opened on Nov 3, 2026
  

• Decide whether CI's Jest step should run with --ci and --passWithNoTests=false

  galaxyproject/brc-analytics#1946 · Filter by author NoopDog opened on Nov 2, 2026
  1

  

• Gene pages: explore a gene's BioNym graph on its page

  galaxyproject/brc-analytics#1945 · Filter by author NoopDog opened on Nov 2, 2026
  

• Gene pages: show the evidence BioNym gathers about a gene

  galaxyproject/brc-analytics#1943 · Filter by author NoopDog opened on Nov 2, 2026
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• Gene pages: add Kelch13 to the example genes on the genes page

  galaxyproject/brc-analytics#1942 · Filter by author NoopDog opened on Nov 2, 2026
  

• Give each assembly page its own title and description

  galaxyproject/brc-analytics#1940 · Filter by author frano-m opened on Nov 2, 2026
  

• Gene pages: link a gene's location to UCSC only when UCSC's browser has its sequence

  galaxyproject/brc-analytics#1937 · Filter by author frano-m opened on Nov 2, 2026
  

• Catalog picks UCSC's augustus prediction over a VEuPathDB gene model GTF for 51 assemblies

  galaxyproject/brc-analytics#1936 · Filter by author NoopDog opened on Nov 1, 2026
  

• Gene catalog: ideas for measuring and showing how good each gene annotation is

  galaxyproject/brc-analytics#1935 · Filter by author NoopDog opened on Nov 1, 2026
  

• Gene catalog: run BUSCO on the AUGUSTUS GTFs, if gene counts aren't enough to judge them

  galaxyproject/brc-analytics#1934 · Filter by author NoopDog opened on Nov 1, 2026
  

• Gene catalog: run BUSCO on the NCBI and VEuPathDB gene annotations and show how complete each is

  galaxyproject/brc-analytics#1933 · Filter by author NoopDog opened on Nov 1, 2026
  

• Gene catalog: show who made each GTF and how its gene count compares with NCBI annotations of the same species

  galaxyproject/brc-analytics#1932 · Filter by author NoopDog opened on Nov 1, 2026
  

• Gene pages: write a charter that says why we're building them

  galaxyproject/brc-analytics#1927 · Filter by author NoopDog opened on Oct 30, 2026
  

• Gene pages: give GenBank GFF3s, which have no #!annotation-source, their provider and release date

  galaxyproject/brc-analytics#1917 · Filter by author NoopDog opened on Oct 29, 2026

• Gene pages: read genes whose CDS rows sit straight under the gene, with no transcript row

  galaxyproject/brc-analytics#1916 · Filter by author NoopDog opened on Oct 29, 2026

• Gene pages: look up a list of gene IDs on one assembly through the gene API

  galaxyproject/brc-analytics#1908 · Filter by author NoopDog opened on Oct 28, 2026